STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EER74132.1Hypothetical protein; COG: COG1426. (316 aa)    
Predicted Functional Partners:
pgsA
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; COG: COG0558; Pfam: PF01066; InterPro: IPR004570; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.934
mreB2
Cell shape determining protein, MreB/Mrl family; COG: COG1077; Pfam: PF06723; InterPro: IPR004753.
 
 
 0.858
mreB1
Cell shape determining protein, MreB/Mrl family; COG: COG1077; Pfam: PF06723; InterPro: IPR004753.
 
 
 0.836
cinA
Competence/damage-inducible domain protein CinA; COG: COG1546; Pfam: PF02464; InterPro: IPR008136; Belongs to the CinA family.
  
    0.717
EER74133.1
Peptidase, M16 family; COG: COG0612; Pfam: PF00675,PF05193; InterPro: IPR011237.
       0.662
EER74134.1
Peptidase M16 inactive domain protein; Pfam: PF05193; InterPro: IPR011237.
       0.662
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
 
 
 
 0.642
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
  
 
 0.621
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.589
rpmC
Ribosomal protein L29; COG: COG0255; Pfam: PF00831; InterPro: IPR001854; Belongs to the universal ribosomal protein uL29 family.
    
   0.588
Your Current Organism:
Weissella paramesenteroides
NCBI taxonomy Id: 585506
Other names: W. paramesenteroides ATCC 33313, Weissella paramesenteroides ATCC 33313, Weissella paramesenteroides str. ATCC 33313, Weissella paramesenteroides strain ATCC 33313
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.