Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFK54771.1 | EFK54773.1 | HMPREF0291_10029 | HMPREF0291_10031 | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | Hypothetical protein; COG: COG1162; Pfam: PF03193; InterPro: IPR004881. | 0.804 |
EFK54771.1 | aroA | HMPREF0291_10029 | HMPREF0291_10030 | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.801 |
EFK54771.1 | xerC | HMPREF0291_10029 | HMPREF0291_11354 | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.759 |
EFK54773.1 | EFK54771.1 | HMPREF0291_10031 | HMPREF0291_10029 | Hypothetical protein; COG: COG1162; Pfam: PF03193; InterPro: IPR004881. | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | 0.804 |
EFK54773.1 | aroA | HMPREF0291_10031 | HMPREF0291_10030 | Hypothetical protein; COG: COG1162; Pfam: PF03193; InterPro: IPR004881. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.914 |
aroA | EFK54771.1 | HMPREF0291_10030 | HMPREF0291_10029 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | 0.801 |
aroA | EFK54773.1 | HMPREF0291_10030 | HMPREF0291_10031 | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | Hypothetical protein; COG: COG1162; Pfam: PF03193; InterPro: IPR004881. | 0.914 |
xerC | EFK54771.1 | HMPREF0291_11354 | HMPREF0291_10029 | Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | Hypothetical protein; COG: COG2135; Pfam: PF02586; InterPro: IPR003738; Belongs to the SOS response-associated peptidase family. | 0.759 |