Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFK53801.1 | EFK54775.1 | HMPREF0291_11458 | HMPREF0291_10033 | ROK family protein; COG: COG1940; Pfam: PF00480. | Hypothetical protein; Pfam: PF00702. | 0.641 |
EFK53801.1 | EFK54790.1 | HMPREF0291_11458 | HMPREF0291_10048 | ROK family protein; COG: COG1940; Pfam: PF00480. | Hypothetical protein. | 0.636 |
EFK53801.1 | EFK55254.1 | HMPREF0291_11458 | HMPREF0291_10512 | ROK family protein; COG: COG1940; Pfam: PF00480. | Hypothetical protein; COG: COG1940; Pfam: PF00480. | 0.720 |
EFK53801.1 | fbaA | HMPREF0291_11458 | HMPREF0291_10798 | ROK family protein; COG: COG1940; Pfam: PF00480. | Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. | 0.896 |
EFK53801.1 | pgi | HMPREF0291_11458 | HMPREF0291_12135 | ROK family protein; COG: COG1940; Pfam: PF00480. | Glucose-6-phosphate isomerase; COG: COG0166; Pfam: PF00342; InterPro: IPR001672; Belongs to the GPI family. | 0.940 |
EFK53801.1 | pgm | HMPREF0291_11458 | HMPREF0291_10954 | ROK family protein; COG: COG1940; Pfam: PF00480. | Phosphoglucomutase, alpha-D-glucose phosphate-specific; COG: COG0033; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR005852. | 0.915 |
EFK53801.1 | tal | HMPREF0291_11458 | HMPREF0291_11565 | ROK family protein; COG: COG1940; Pfam: PF00480. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. | 0.936 |
EFK53801.1 | zwf | HMPREF0291_11458 | HMPREF0291_11564 | ROK family protein; COG: COG1940; Pfam: PF00480. | Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.898 |
EFK54775.1 | EFK53801.1 | HMPREF0291_10033 | HMPREF0291_11458 | Hypothetical protein; Pfam: PF00702. | ROK family protein; COG: COG1940; Pfam: PF00480. | 0.641 |
EFK54775.1 | EFK54790.1 | HMPREF0291_10033 | HMPREF0291_10048 | Hypothetical protein; Pfam: PF00702. | Hypothetical protein. | 0.556 |
EFK54775.1 | EFK55254.1 | HMPREF0291_10033 | HMPREF0291_10512 | Hypothetical protein; Pfam: PF00702. | Hypothetical protein; COG: COG1940; Pfam: PF00480. | 0.659 |
EFK54775.1 | pgm | HMPREF0291_10033 | HMPREF0291_10954 | Hypothetical protein; Pfam: PF00702. | Phosphoglucomutase, alpha-D-glucose phosphate-specific; COG: COG0033; Pfam: PF02878,PF02879,PF02880,PF00408; InterPro: IPR005852. | 0.539 |
EFK54790.1 | EFK53801.1 | HMPREF0291_10048 | HMPREF0291_11458 | Hypothetical protein. | ROK family protein; COG: COG1940; Pfam: PF00480. | 0.636 |
EFK54790.1 | EFK54775.1 | HMPREF0291_10048 | HMPREF0291_10033 | Hypothetical protein. | Hypothetical protein; Pfam: PF00702. | 0.556 |
EFK54790.1 | EFK55254.1 | HMPREF0291_10048 | HMPREF0291_10512 | Hypothetical protein. | Hypothetical protein; COG: COG1940; Pfam: PF00480. | 0.770 |
EFK54790.1 | fbaA | HMPREF0291_10048 | HMPREF0291_10798 | Hypothetical protein. | Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family. | 0.649 |
EFK54790.1 | pgi | HMPREF0291_10048 | HMPREF0291_12135 | Hypothetical protein. | Glucose-6-phosphate isomerase; COG: COG0166; Pfam: PF00342; InterPro: IPR001672; Belongs to the GPI family. | 0.682 |
EFK54790.1 | tal | HMPREF0291_10048 | HMPREF0291_11565 | Hypothetical protein. | Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily. | 0.646 |
EFK54790.1 | zwf | HMPREF0291_10048 | HMPREF0291_11564 | Hypothetical protein. | Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. | 0.686 |
EFK55252.1 | EFK55254.1 | HMPREF0291_10510 | HMPREF0291_10512 | Hypothetical protein; COG: COG4805; Pfam: PF05960; InterPro: IPR010281. | Hypothetical protein; COG: COG1940; Pfam: PF00480. | 0.680 |
page 1 of 4