STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFK54721.1Ankyrin repeat protein; COG: COG0666; Pfam: PF00023; InterPro: IPR002110. (137 aa)    
Predicted Functional Partners:
EFK54241.1
Hypothetical protein.
  
 0.983
EFK54020.1
Tetratricopeptide repeat protein; Pfam: PF07721.
   
 0.978
EFK54846.1
GMC oxidoreductase; COG: COG2303; Pfam: PF00732,PF05199; InterPro: IPR000172.
  
 
 0.951
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 0.939
EFK53576.1
Cytochrome b/b6 family protein; COG: COG1290; Pfam: PF00033; InterPro: IPR016175.
    
  0.937
EFK55466.1
Putative acyl carrier protein; COG: COG3321; Pfam: PF00550,PF00109,PF02801,PF00698,PF00975; InterPro: IPR000794.
   
 0.919
arc
Proteasome ATPase; COG: COG0464; Pfam: PF00004; InterPro: IPR003959.
    
 0.914
hrpB
ATP-dependent helicase HrpB; COG: COG1643; Pfam: PF00271,PF04408,PF08482; InterPro: IPR010225.
    
 0.912
hrpA
ATP-dependent helicase HrpA; COG: COG1643; Pfam: PF00271,PF04408,PF07717; InterPro: IPR010222.
    
 0.912
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.901
Your Current Organism:
Corynebacterium genitalium
NCBI taxonomy Id: 585529
Other names: C. genitalium ATCC 33030, Corynebacterium genitalium ATCC 33030, Corynebacterium genitalium NCTC 11859, Corynebacterium genitalium str. ATCC 33030, Corynebacterium genitalium strain ATCC 33030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.