Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFK53692.1 | EFK53693.1 | HMPREF0291_11349 | HMPREF0291_11350 | Hypothetical protein. | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | 0.636 |
EFK53692.1 | EFK53694.1 | HMPREF0291_11349 | HMPREF0291_11351 | Hypothetical protein. | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | 0.636 |
EFK53692.1 | dprA | HMPREF0291_11349 | HMPREF0291_11352 | Hypothetical protein. | DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488. | 0.636 |
EFK53692.1 | lepB | HMPREF0291_11349 | HMPREF0291_11347 | Hypothetical protein. | Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR000223; Belongs to the peptidase S26 family. | 0.849 |
EFK53692.1 | rnhB | HMPREF0291_11349 | HMPREF0291_11348 | Hypothetical protein. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.843 |
EFK53692.1 | rplS | HMPREF0291_11349 | HMPREF0291_11346 | Hypothetical protein. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.709 |
EFK53692.1 | xerC | HMPREF0291_11349 | HMPREF0291_11354 | Hypothetical protein. | Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.484 |
EFK53693.1 | EFK53692.1 | HMPREF0291_11350 | HMPREF0291_11349 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Hypothetical protein. | 0.636 |
EFK53693.1 | EFK53694.1 | HMPREF0291_11350 | HMPREF0291_11351 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | 0.907 |
EFK53693.1 | dprA | HMPREF0291_11350 | HMPREF0291_11352 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488. | 0.895 |
EFK53693.1 | lepB | HMPREF0291_11350 | HMPREF0291_11347 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR000223; Belongs to the peptidase S26 family. | 0.656 |
EFK53693.1 | rnhB | HMPREF0291_11350 | HMPREF0291_11348 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.636 |
EFK53693.1 | rplS | HMPREF0291_11350 | HMPREF0291_11346 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.643 |
EFK53693.1 | xerC | HMPREF0291_11350 | HMPREF0291_11354 | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | Putative tyrosine recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.538 |
EFK53694.1 | EFK53692.1 | HMPREF0291_11351 | HMPREF0291_11349 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | Hypothetical protein. | 0.636 |
EFK53694.1 | EFK53693.1 | HMPREF0291_11351 | HMPREF0291_11350 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | TIGR00252 family protein; COG: COG0792; Pfam: PF02021; InterPro: IPR003509; Belongs to the UPF0102 family. | 0.907 |
EFK53694.1 | EFK54719.1 | HMPREF0291_11351 | HMPREF0291_11099 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | ComEC/Rec2-like protein; COG: COG0658; Pfam: PF03772; InterPro: IPR004477. | 0.578 |
EFK53694.1 | dprA | HMPREF0291_11351 | HMPREF0291_11352 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | DNA protecting protein DprA; COG: COG0758; Pfam: PF02481; InterPro: IPR003488. | 0.955 |
EFK53694.1 | lepB | HMPREF0291_11351 | HMPREF0291_11347 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR000223; Belongs to the peptidase S26 family. | 0.641 |
EFK53694.1 | rnhB | HMPREF0291_11351 | HMPREF0291_11348 | Mg chelatase-like protein; COG: COG0606; Pfam: PF01078; InterPro: IPR004482. | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.636 |
page 1 of 4