STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtBPhytoene/squalene synthetase; COG: COG1562; Pfam: PF00494; InterPro: IPR002060. (284 aa)    
Predicted Functional Partners:
crtI
Phytoene desaturase; COG: COG1233; Pfam: PF01593; InterPro: IPR014105.
 
 0.999
EFG48180.1
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family.
 
 0.988
ubiA
Dimethylallyltranstransferase; COG: COG0382; Pfam: PF01040.
 
  
 0.976
lctB
Lycopene cyclase domain protein.
 
  
 0.973
crtYe
Lycopene cyclase domain protein.
 
   
 0.972
ddsA
Polyprenyl synthetase; COG: COG0142; Pfam: PF00348; InterPro: IPR008949; Belongs to the FPP/GGPP synthase family.
  
 0.962
uppS
Di-trans,poly-cis-decaprenylcistransferase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
   
 
 0.896
ansB
Tat pathway signal sequence domain protein; COG: COG0252; Pfam: PF00710; InterPro: IPR006034.
       0.773
trpD
Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA).
     
 0.716
EFG46299.1
MATE efflux family protein; COG: COG0534; Pfam: PF01554; InterPro: IPR002528.
   
 
 0.713
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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