STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47907.1Putative membrane protein; COG: COG5006; Pfam: PF00892; InterPro: IPR000620. (316 aa)    
Predicted Functional Partners:
EFG47908.1
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
 
   
 0.597
EFG47909.1
Putative toxin-antitoxin system toxin component, PIN family.
       0.518
ybaK
YbaK/EbsC protein; COG: COG2606; Pfam: PF04073; InterPro: IPR004369; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
 
     0.431
EFG48679.1
Translocator protein, LysE family; COG: COG1280; Pfam: PF01810; InterPro: IPR001123.
     
 0.407
rarD
Protein RarD; COG: COG2962; Pfam: PF00892; InterPro: IPR004626.
      
 0.405
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.