STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG47424.1Bacterial type II secretion system domain protein F; Pfam: PF00482. (217 aa)    
Predicted Functional Partners:
EFG47421.1
CpaE-like protein.
 
  
 0.853
EFG47423.1
Bacterial type II secretion system domain protein F; Pfam: PF00482.
 
     0.830
cpaF
Helicase/secretion neighborhood ATPase; COG: COG4962; Pfam: PF00437; InterPro: IPR001482.
  
  
 0.808
EFG47425.1
Hypothetical protein.
     
 0.700
EFG47360.1
TadE-like protein; Pfam: PF07811.
  
  
 0.545
EFG47049.1
Hypothetical protein.
 
    0.470
EFG47426.1
Hypothetical protein.
       0.411
cpaF3
Type II/IV secretion system protein; COG: COG4962; Pfam: PF00437; InterPro: IPR001482.
  
  
 0.408
cpaF2
Type II/IV secretion system protein; COG: COG4962; Pfam: PF00437; InterPro: IPR001482.
  
  
 0.408
EFG47420.1
Hypothetical protein.
       0.406
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.