STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpIntegrase core domain protein; Pfam: PF00665; InterPro: IPR001584. (328 aa)    
Predicted Functional Partners:
EFG47433.1
ABC-2 type transporter; Pfam: PF01061; InterPro: IPR013525.
       0.773
EFG47434.1
ABC transporter, ATP-binding protein; COG: COG1131; Pfam: PF00005; InterPro: IPR003593.
       0.773
EFG47435.1
Transcriptional regulator, AbrB family; Pfam: PF04014; InterPro: IPR006339.
       0.773
EFG47661.1
Hypothetical protein.
  
     0.750
tnp3514a
Integrase core domain protein; COG: COG2801; Pfam: PF00665; InterPro: IPR001584.
  
     0.503
EFG47436.1
Putative DEAH-box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
       0.401
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.