Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFG46801.1 | EFG47152.1 | HMPREF0183_1926 | HMPREF0183_1672 | Hypothetical protein. | Hypothetical protein; COG: COG2508. | 0.476 |
EFG46801.1 | EFG47464.1 | HMPREF0183_1926 | HMPREF0183_1256 | Hypothetical protein. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.449 |
EFG47152.1 | EFG46801.1 | HMPREF0183_1672 | HMPREF0183_1926 | Hypothetical protein; COG: COG2508. | Hypothetical protein. | 0.476 |
EFG47152.1 | EFG47464.1 | HMPREF0183_1672 | HMPREF0183_1256 | Hypothetical protein; COG: COG2508. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.483 |
EFG47152.1 | EFG47884.1 | HMPREF0183_1672 | HMPREF0183_0777 | Hypothetical protein; COG: COG2508. | Hypothetical protein. | 0.471 |
EFG47302.1 | EFG47464.1 | HMPREF0183_1407 | HMPREF0183_1256 | Hypothetical protein. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.425 |
EFG47460.1 | EFG47462.1 | HMPREF0183_1252 | HMPREF0183_1254 | Hypothetical protein. | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | 0.773 |
EFG47460.1 | EFG47463.1 | HMPREF0183_1252 | HMPREF0183_1255 | Hypothetical protein. | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.518 |
EFG47460.1 | EFG47464.1 | HMPREF0183_1252 | HMPREF0183_1256 | Hypothetical protein. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.518 |
EFG47460.1 | def-2 | HMPREF0183_1252 | HMPREF0183_1251 | Hypothetical protein. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.732 |
EFG47460.1 | msrA | HMPREF0183_1252 | HMPREF0183_1253 | Hypothetical protein. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.773 |
EFG47462.1 | EFG47460.1 | HMPREF0183_1254 | HMPREF0183_1252 | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | Hypothetical protein. | 0.773 |
EFG47462.1 | EFG47463.1 | HMPREF0183_1254 | HMPREF0183_1255 | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | 0.518 |
EFG47462.1 | EFG47464.1 | HMPREF0183_1254 | HMPREF0183_1256 | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.583 |
EFG47462.1 | def-2 | HMPREF0183_1254 | HMPREF0183_1251 | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.732 |
EFG47462.1 | msrA | HMPREF0183_1254 | HMPREF0183_1253 | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.774 |
EFG47463.1 | EFG47460.1 | HMPREF0183_1255 | HMPREF0183_1252 | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Hypothetical protein. | 0.518 |
EFG47463.1 | EFG47462.1 | HMPREF0183_1255 | HMPREF0183_1254 | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701. | 0.518 |
EFG47463.1 | EFG47464.1 | HMPREF0183_1255 | HMPREF0183_1256 | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | CAAX amino terminal protease family protein; Pfam: PF02517. | 0.801 |
EFG47463.1 | def-2 | HMPREF0183_1255 | HMPREF0183_1251 | RND transporter, HAE1/HME family, permease protein; COG: COG0841; Pfam: PF00873; InterPro: IPR001036; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.494 |
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