STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catDPutative 3-oxoadipate enol-lactonase; COG: COG0596; Pfam: PF00561; InterPro: IPR000073. (261 aa)    
Predicted Functional Partners:
purB
Putative adenylosuccinate lyase; COG: COG0015; Pfam: PF00206,PF08328; InterPro: IPR000362.
  
 
 0.908
EFG47262.1
CoA binding domain protein; COG: COG1042; Pfam: PF00583,PF02629; InterPro: IPR016181.
  
 
  0.904
scoA
3-oxoacid CoA-transferase, A subunit; COG: COG1788; Pfam: PF01144; InterPro: IPR004165; overlaps another CDS with the same product name.
  
 
 0.899
scoB
3-oxoacid CoA-transferase, B subunit; COG: COG2057; Pfam: PF01144; InterPro: IPR004165; overlaps another CDS with the same product name.
  
 
 0.896
accD
Putative acetyl-CoA carboxylase, carboxyl transferase, beta subunit; COG: COG0777; Pfam: PF01039; InterPro: IPR000022.
    
  0.895
EFG46497.1
Aldehyde dehydrogenase (NAD) family protein; COG: COG1012; Pfam: PF01619,PF00171; InterPro: IPR015590; Belongs to the aldehyde dehydrogenase family.
  
 
 0.887
EFG46569.1
Cupin domain protein; COG: COG1917; Pfam: PF07883.
  
 
 0.875
EFG48556.1
Carbamoyl-phosphate synthase L chain, ATP binding domain protein; COG: COG4799; Pfam: PF00289,PF02786,PF02785,PF01039; InterPro: IPR013816.
  
 
  0.846
mmsB
3-hydroxyisobutyrate dehydrogenase; COG: COG2084; Pfam: PF03446; InterPro: IPR011548.
  
 
 0.814
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
  
 
 0.765
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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