Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EFG46743.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
EFG46781.1
Hypothetical protein.
 
     0.976
EFG46742.1
ParB-like protein; Pfam: PF02195.
 
     0.948
EFG46950.1
Hypothetical protein.
 
     0.783
EFG46754.1
Hypothetical protein.
 
     0.783
EFG46737.1
Bifunctional DNA primase/polymerase domain protein; Pfam: PF09250; InterPro: IPR015330.
 
     0.783
EFG46537.1
Hypothetical protein.
 
     0.781
EFG46740.1
Hypothetical protein; Pfam: PF08751.
  
     0.773
EFG46785.1
Hypothetical protein.
  
     0.772
EFG46739.1
Hypothetical protein.
  
     0.772
EFG46539.1
Hypothetical protein.
 
     0.772
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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