STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFG46734.1AMP-binding enzyme; COG: COG0318; Pfam: PF00501; InterPro: IPR000873. (447 aa)    
Predicted Functional Partners:
EFG46729.1
Thioesterase domain protein; Pfam: PF00975; InterPro: IPR001031.
  
 
 0.823
EFG46728.1
SnoaL-like polyketide cyclase; Pfam: PF07366; InterPro: IPR009959.
 
     0.803
dfnC
Oxidoreductase, short chain dehydrogenase/reductase family protein; COG: COG1028; Pfam: PF00106; InterPro: IPR016040.
  
  0.803
EFG46730.1
Hypothetical protein.
       0.773
EFG46731.1
Hypothetical protein; Similar to Pseudomonas avirulence D protein; Pfam: PF05655; InterPro: IPR008799.
       0.773
EFG46732.1
Hypothetical protein.
       0.773
alkK
AMP-binding enzyme; COG: COG0318; Pfam: PF00501; InterPro: IPR000873.
  
     0.728
acp
Putative acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
  0.706
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.695
EFG47170.1
AMP-binding enzyme; COG: COG1022; Pfam: PF00501; InterPro: IPR000873.
  
 
  0.689
Your Current Organism:
Brevibacterium mcbrellneri
NCBI taxonomy Id: 585530
Other names: B. mcbrellneri ATCC 49030, Brevibacterium mcbrellneri ATCC 49030, Brevibacterium mcbrellneri str. ATCC 49030, Brevibacterium mcbrellneri strain ATCC 49030
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.