STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ74477.1Sortase A. (210 aa)    
Predicted Functional Partners:
SDJ74376.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
 
     0.750
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.720
SDJ74410.1
L-serine dehydratase; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.714
SDK49361.1
Predicted arabinose efflux permease, MFS family.
  
     0.642
SDK49270.1
Hypothetical protein.
  
     0.633
SDK48817.1
Hypothetical protein.
  
     0.614
SDJ70368.1
Hypothetical protein.
  
     0.585
SDJ61156.1
Peptidoglycan pentaglycine glycine transferase (the second and third glycine).
  
    0.576
SDJ74337.1
Hypothetical protein.
     
 0.560
SDJ63064.1
Predicted phosphoesterase, NUDIX family.
  
     0.558
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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