STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK14529.1Competence protein ComFA. (414 aa)    
Predicted Functional Partners:
SDK14553.1
Competence protein ComFC.
  
  
 0.929
SDJ56144.1
Competence protein ComGC; Required for transformation and DNA binding.
  
  
 0.775
SDJ56073.1
Competence protein ComGA.
   
  
 0.766
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
       0.766
SDK14479.1
EDD domain protein, DegV family.
       0.741
SDJ53951.1
Competence protein ComEA.
   
  
 0.740
SDJ56183.1
Competence protein ComGD.
   
  
 0.737
SDJ55573.1
Penicillin-binding protein 3.
  
     0.683
SDJ56110.1
Competence protein ComGB.
   
  
 0.675
SDK24729.1
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.658
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.