Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK26508.1 | SDK26543.1 | SAMN05216187_106129 | SAMN05216187_106130 | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | SAP domain-containing protein. | 0.529 |
SDK26543.1 | SDK26508.1 | SAMN05216187_106130 | SAMN05216187_106129 | SAP domain-containing protein. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. | 0.529 |
SDK26543.1 | SDK26583.1 | SAMN05216187_106130 | SAMN05216187_106131 | SAP domain-containing protein. | Hypothetical protein. | 0.547 |
SDK26543.1 | pfkA | SAMN05216187_106130 | SAMN05216187_101313 | SAP domain-containing protein. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.446 |
SDK26543.1 | rpsN | SAMN05216187_106130 | SAMN05216187_106132 | SAP domain-containing protein. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.402 |
SDK26583.1 | SDK26543.1 | SAMN05216187_106131 | SAMN05216187_106130 | Hypothetical protein. | SAP domain-containing protein. | 0.547 |
SDK26583.1 | rpsN | SAMN05216187_106131 | SAMN05216187_106132 | Hypothetical protein. | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.550 |
pfkA | SDK26543.1 | SAMN05216187_101313 | SAMN05216187_106130 | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | SAP domain-containing protein. | 0.446 |
rpsN | SDK26543.1 | SAMN05216187_106132 | SAMN05216187_106130 | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | SAP domain-containing protein. | 0.402 |
rpsN | SDK26583.1 | SAMN05216187_106132 | SAMN05216187_106131 | Small subunit ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | Hypothetical protein. | 0.550 |