STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK28059.1Conserved domain-containing protein. (305 aa)    
Predicted Functional Partners:
SDJ83221.1
Magnesium transporter.
   
    0.667
SDK65750.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.666
SDJ73870.1
Fatty-acid peroxygenase.
  
    0.652
rsbW
Serine/threonine-protein kinase RsbW; Negative regulator of sigma-B activity. Phosphorylates and inactivates its specific antagonist protein, RsbV. Upon phosphorylation of RsbV, RsbW is released and binds to sigma-B, thereby blocking its ability to form an RNA polymerase holoenzyme (E-sigma-B).
   
    0.642
SDK65697.1
RNA polymerase sigma-B factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.638
SDK28018.1
Protein of unknown function (DU1801).
       0.542
SDK63482.1
Osmoprotectant transport system substrate-binding protein.
 
    0.516
SDJ61010.1
Heat induced stress protein YflT.
   
  
 0.514
SDK28098.1
Uncharacterized lipoprotein YehR, DUF1307 family.
  
    0.506
SDJ71866.1
Cytochrome c oxidase subunit 2; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.502
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.