STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK31080.1ABC-2 type transport system permease protein. (358 aa)    
Predicted Functional Partners:
SDK31123.1
ABC-2 type transport system ATP-binding protein.
 
 0.981
SDK31034.1
Lactoylglutathione lyase.
 
     0.768
SDJ70657.1
ABC-2 type transport system ATP-binding protein.
 
 0.746
SDK30992.1
Diamine N-acetyltransferase.
       0.707
SDJ92992.1
ABC-2 type transport system ATP-binding protein.
 
 0.588
SDK06717.1
ABC-2 type transport system ATP-binding protein.
 
 0.581
SDK05615.1
Nitroreductase.
  
    0.450
SDK54318.1
FMN reductase (NADPH); Belongs to the flavin oxidoreductase frp family.
  
    0.450
SDK30946.1
Superfamily II DNA or RNA helicase.
       0.436
SDJ70706.1
ABC-2 type transport system permease protein.
  
    0.431
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.