STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK43458.1Hypothetical protein. (129 aa)    
Predicted Functional Partners:
SDK43500.1
Hypothetical protein.
       0.796
SDK43418.1
Phage head-tail joining protein.
       0.787
SDK43337.1
Hypothetical protein.
       0.773
SDK43376.1
Uncharacterized phage protein (possible DNA packaging).
       0.773
SDK43543.1
Phage major tail protein, phi13 family.
       0.762
SDK43583.1
Hypothetical protein.
       0.563
SDK43140.1
Hypothetical protein.
       0.520
SDK43215.1
Phage portal protein, HK97 family.
       0.506
SDK43176.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.490
SDK43300.1
Phage major capsid protein, HK97 family.
       0.488
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.