STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK62463.1Transcriptional regulator, IclR family. (244 aa)    
Predicted Functional Partners:
SDK62493.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.773
SDK62553.1
TRAP transporter, DctM subunit.
 
  
  0.751
SDK04258.1
Sensor histidine kinase inhibitor, KipI family.
  
    0.731
SDK04220.1
Biotin-dependent carboxylase uncharacterized domain-containing protein.
  
    0.714
SDK62525.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.618
SDK62352.1
TRAP transporter, DctM subunit.
 
  
  0.609
SDK62320.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
     0.585
SDK62614.1
2-methylcitrate dehydratase PrpD.
 
    0.578
SDK62668.1
Benzoate membrane transport protein.
 
   
 0.551
SDK62412.1
Transcriptional regulator, IclR family.
 
    
0.531
Your Current Organism:
Jeotgalicoccus halophilus
NCBI taxonomy Id: 586411
Other names: CGMCC 1.8911, J. halophilus, Jeotgalicoccus halophilus Liu et al. 2011, Jeotgalicoccus sp. C1-52, Jeotgalicoccus sp. YD-9, NBRC 105788, strain C1-52
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.