STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcDExonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (383 aa)    
Predicted Functional Partners:
AIF66593.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.998
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 0.989
dinG
DNA polymerase III subunit epsilon; 3'-5' exonuclease.
  
 0.856
AIF67809.1
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.826
AIF66548.1
5'-3' exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.802
AIF66592.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.793
AIF65265.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.667
AIF67682.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.667
AIF68178.1
Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.667
addA
ATP-dependent helicase; ATP-dependent DNA helicase.
 
  
 0.615
Your Current Organism:
Terribacillus aidingensis
NCBI taxonomy Id: 586416
Other names: CGMCC 1.8913, NBRC 105790, T. aidingensis, Terribacillus aidingensis Liu et al. 2010, Terribacillus sp. AECST01, Terribacillus sp. AECST02, Terribacillus sp. AECST03, Terribacillus sp. AECST04, Terribacillus sp. DB2, Terribacillus sp. IA7, Terribacillus sp. YI7-61, strain YI7-61
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