STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
17.m07337Hydrolase, NUDIX family protein. (450 aa)    
Predicted Functional Partners:
17.m07747
Dcp1-like decapping family protein.
    
 0.999
18.m06534
ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.
  
 0.998
18.m06591
5'-3' exoribonuclease (XRN2), putative.
   
 0.998
23.m05947
LSM domain containing protein.
    
 0.939
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.935
17.m07506
Uncharacterized protein.
   
 
 0.934
BBOV_III006830
CAF1 family ribonuclease containing protein.
    
 
 0.913
17.m07178
Regulator of nonsense transcripts, putative.
    
 
 0.903
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.903
18.m06211
U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.888
Your Current Organism:
Babesia bovis
NCBI taxonomy Id: 5865
Other names: B. bovis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.