BBBOND_0209070 protein (Babesia bigemina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BBBOND_0209070

DEAD/DEAH box helicase family protein, putative. (513 aa)

Predicted Functional Partners:

BBBOND_0108510

0.961

BBBOND_0302220

0.903

BBBOND_0303490

0.894

BBBOND_0103510

0.878

BBBOND_0401250

0.861

BBBOND_0303700

0.853

BBBOND_0108910

0.833

BBBOND_0312850

0.829

BBBOND_0107970

0.828

BBBOND_0313160

0.825

Your Current Organism:

Babesia bigemina

NCBI taxonomy Id: 5866
Other names: B. bigemina

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BBBOND_0103510	BBBOND_0107970	A0A061D1N2	A0A061D6E0	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA helicase, putative.	0.998
BBBOND_0103510	BBBOND_0108510	A0A061D1N2	A0A061D1M9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10/Utp3/C1D family protein, related to chromatin silencing, putative.	0.999
BBBOND_0103510	BBBOND_0108910	A0A061D1N2	A0A061D1S1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN, putative.	0.999
BBBOND_0103510	BBBOND_0209070	A0A061D1N2	A0A061D5B8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DEAD/DEAH box helicase family protein, putative.	0.878
BBBOND_0103510	BBBOND_0302220	A0A061D1N2	A0A061D730	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	ESF1 homolog.	0.933
BBBOND_0103510	BBBOND_0303490	A0A061D1N2	A0A061DDP6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	BOP1NT (NUC169) domain containing protein, putative.	0.624
BBBOND_0103510	BBBOND_0303700	A0A061D1N2	A0A061D6Y5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD-REPEAT PROTEIN BING4, putative or Probable U3 small nucleolar RNA-associated protein 7.	0.999
BBBOND_0103510	BBBOND_0312850	A0A061D1N2	A0A061DBQ2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.721
BBBOND_0103510	BBBOND_0313160	A0A061D1N2	A0A061DA54	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.997
BBBOND_0103510	BBBOND_0401250	A0A061D1N2	A0A061DAQ5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DEAD box RNA helicase, putative.	0.999
BBBOND_0107970	BBBOND_0103510	A0A061D6E0	A0A061D1N2	RNA helicase, putative.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.998
BBBOND_0107970	BBBOND_0108510	A0A061D6E0	A0A061D1M9	RNA helicase, putative.	Sas10/Utp3/C1D family protein, related to chromatin silencing, putative.	0.999
BBBOND_0107970	BBBOND_0108910	A0A061D6E0	A0A061D1S1	RNA helicase, putative.	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN, putative.	0.999
BBBOND_0107970	BBBOND_0209070	A0A061D6E0	A0A061D5B8	RNA helicase, putative.	DEAD/DEAH box helicase family protein, putative.	0.828
BBBOND_0107970	BBBOND_0302220	A0A061D6E0	A0A061D730	RNA helicase, putative.	ESF1 homolog.	0.750
BBBOND_0107970	BBBOND_0303490	A0A061D6E0	A0A061DDP6	RNA helicase, putative.	BOP1NT (NUC169) domain containing protein, putative.	0.619
BBBOND_0107970	BBBOND_0303700	A0A061D6E0	A0A061D6Y5	RNA helicase, putative.	WD-REPEAT PROTEIN BING4, putative or Probable U3 small nucleolar RNA-associated protein 7.	0.993
BBBOND_0107970	BBBOND_0312850	A0A061D6E0	A0A061DBQ2	RNA helicase, putative.	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.	0.821
BBBOND_0107970	BBBOND_0313160	A0A061D6E0	A0A061DA54	RNA helicase, putative.	Uncharacterized protein.	0.564
BBBOND_0107970	BBBOND_0401250	A0A061D6E0	A0A061DAQ5	RNA helicase, putative.	DEAD box RNA helicase, putative.	0.963