STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBBOND_0300510E3 ubiquitin-protein ligase l. (1788 aa)    
Predicted Functional Partners:
BBBOND_0403410
Ubiquitin transferase, HECT domain containing protein, putative.
   
 
 0.993
BBBOND_0404980
-Clumping factor A.
    
 
 0.958
BBBOND_0200380
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
 0.903
BBBOND_0404310
NFACT-R_1 domain-containing protein.
    
 
 0.881
BBBOND_0404380
Uncharacterized protein.
   
 
 0.809
BBBOND_0200770
Ribosomal protein L6e, putative.
    
   0.807
BBBOND_0302930
60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.775
BBBOND_0404150
Ribosomal protein L2 family protein, putative.
    
   0.749
BBBOND_0209330
60S ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family.
    
 
 0.743
BBBOND_0202590
Ribosomal protein L13, putative.
    
   0.724
Your Current Organism:
Babesia bigemina
NCBI taxonomy Id: 5866
Other names: B. bigemina
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