STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BBBOND_0302740SRP40_C domain-containing protein. (198 aa)    
Predicted Functional Partners:
BBBOND_0108580
Nucleolar protein Nop56, putative.
   
 
 0.976
BBBOND_0312390
Fibrillarin, putative.
   
 
 0.947
BBBOND_0104120
Nucleolar protein NOP5, putative.
   
 
 0.945
BBBOND_0212110
CBF domain-containing protein.
   
   0.863
BBBOND_0107220
RIBOSOMAL PROTEIN L7AE FAMILY MEMBER protein, putative.
   
 
 0.835
BBBOND_0201970
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.819
BBBOND_0104780
rRNA pseudouridine synthase, putative family protein.
   
 
 0.812
BBBOND_0308700
tRNA pseudouridine synthase, putative.
   
 
 0.812
BBBOND_0107150
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.804
BBBOND_0106180
Uncharacterized protein.
   
  
 0.803
Your Current Organism:
Babesia bigemina
NCBI taxonomy Id: 5866
Other names: B. bigemina
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