STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005001125C-type lectin domain containing 16A. (1047 aa)    
Predicted Functional Partners:
rnf41
Ring finger protein 41.
    
 
 0.651
gpn1
GPN-loop GTPase 1.
 
      0.641
tfb1m
Transcription factor B1, mitochondrial.
 
      0.611
wdr44
WD repeat domain 44.
      
 0.581
aqr
Aquarius intron-binding spliceosomal factor.
      
 0.581
ENSMMDP00005000578
Dexi homolog (mouse).
      
 0.540
vps33b
VPS33B late endosome and lysosome associated.
    
 
 0.520
ppat
Phosphoribosyl pyrophosphate amidotransferase.
      
 0.472
ENSMMDP00005000770
VPS33A core subunit of CORVET and HOPS complexes.
    
 
 0.464
eif4a3
Eukaryotic translation initiation factor 4A3.
      
 0.463
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.