STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf139Ring finger protein 139. (700 aa)    
Predicted Functional Partners:
hm13
Histocompatibility minor 13.
    
 0.980
derl1
Derlin 1.
    
 0.978
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
    
 0.978
ENSMMDP00005018648
annotation not available
    
 0.945
LOC115360079
Transitional endoplasmic reticulum ATPase-like.
    
 0.942
vcp
Valosin containing protein.
    
 0.942
selenos
Selenoprotein S.
    
  0.939
ube2g2
Ubiquitin conjugating enzyme E2 G2.
    
 0.904
SPATA5
Spermatogenesis associated 5.
    
 0.894
spata5l1
Spermatogenesis associated 5 like 1.
    
 0.894
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.