c5h12orf10 protein (Myripristis murdjan) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

c5h12orf10

Chromosome 5 C12orf10 homolog. (393 aa)

Predicted Functional Partners:

ndufs2

0.807

sdha

0.798

sdhc

0.796

ENSMMDP00005018280

0.779

LOC115367189

0.779

ENSMMDP00005012827

0.768

NDUFS1

0.768

mrto4

0.732

nip7

0.661

dohh

0.595

Your Current Organism:

Myripristis murdjan

NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMMDP00005012827	ENSMMDP00005018280	ENSMMDP00005012827	ENSMMDP00005018280	annotation not available	annotation not available	0.997
ENSMMDP00005012827	LOC115367189	ENSMMDP00005012827	ENSMMDP00005045242	annotation not available	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	0.997
ENSMMDP00005012827	c5h12orf10	ENSMMDP00005012827	ENSMMDP00005008402	annotation not available	Chromosome 5 C12orf10 homolog.	0.768
ENSMMDP00005012827	ndufs2	ENSMMDP00005012827	ENSMMDP00005028956	annotation not available	NADH:ubiquinone oxidoreductase core subunit S2.	0.999
ENSMMDP00005012827	sdha	ENSMMDP00005012827	ENSMMDP00005025750	annotation not available	Succinate dehydrogenase complex flavoprotein subunit A.	0.985
ENSMMDP00005012827	sdhc	ENSMMDP00005012827	ENSMMDP00005029614	annotation not available	Succinate dehydrogenase complex subunit C.	0.903
ENSMMDP00005018280	ENSMMDP00005012827	ENSMMDP00005018280	ENSMMDP00005012827	annotation not available	annotation not available	0.997
ENSMMDP00005018280	NDUFS1	ENSMMDP00005018280	ENSMMDP00005047095	annotation not available	NADH:ubiquinone oxidoreductase core subunit S1.	0.997
ENSMMDP00005018280	c5h12orf10	ENSMMDP00005018280	ENSMMDP00005008402	annotation not available	Chromosome 5 C12orf10 homolog.	0.779
ENSMMDP00005018280	dohh	ENSMMDP00005018280	ENSMMDP00005007069	annotation not available	Deoxyhypusine hydroxylase.	0.768
ENSMMDP00005018280	ndufs2	ENSMMDP00005018280	ENSMMDP00005028956	annotation not available	NADH:ubiquinone oxidoreductase core subunit S2.	0.999
ENSMMDP00005018280	sdha	ENSMMDP00005018280	ENSMMDP00005025750	annotation not available	Succinate dehydrogenase complex flavoprotein subunit A.	0.992
ENSMMDP00005018280	sdhc	ENSMMDP00005018280	ENSMMDP00005029614	annotation not available	Succinate dehydrogenase complex subunit C.	0.946
LOC115367189	ENSMMDP00005012827	ENSMMDP00005045242	ENSMMDP00005012827	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	annotation not available	0.997
LOC115367189	NDUFS1	ENSMMDP00005045242	ENSMMDP00005047095	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S1.	0.997
LOC115367189	c5h12orf10	ENSMMDP00005045242	ENSMMDP00005008402	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	Chromosome 5 C12orf10 homolog.	0.779
LOC115367189	dohh	ENSMMDP00005045242	ENSMMDP00005007069	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	Deoxyhypusine hydroxylase.	0.768
LOC115367189	ndufs2	ENSMMDP00005045242	ENSMMDP00005028956	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	NADH:ubiquinone oxidoreductase core subunit S2.	0.999
LOC115367189	sdha	ENSMMDP00005045242	ENSMMDP00005025750	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	Succinate dehydrogenase complex flavoprotein subunit A.	0.992
LOC115367189	sdhc	ENSMMDP00005045242	ENSMMDP00005029614	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like.	Succinate dehydrogenase complex subunit C.	0.946