STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005013662Usher syndrome 1C. (524 aa)    
Predicted Functional Partners:
ENSMMDP00005016237
Cadherin-related 23.
   
 
 0.963
LOC115377408
Usher syndrome type-1G protein homolog.
    
 0.925
LOC115363387
Usher syndrome type-1G protein homolog.
    
 0.925
LOC115362931
Ankyrin repeat and SAM domain-containing protein 4B-like.
    
 0.920
LOC115363124
Ankyrin repeat and SAM domain-containing protein 4B-like.
    
 0.920
ENSMMDP00005009659
Whirlin b.
     
0.909
ENSMMDP00005034086
Whirlin a.
     
0.909
ENSMMDP00005014679
PDZ domain containing 7a.
     
0.895
PDZD7
PDZ domain containing 7.
     
0.895
ENSMMDP00005042267
Usher syndrome 2A (autosomal recessive, mild).
    
 0.853
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.