STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115358977Ras-related protein rab7-like. (205 aa)    
Predicted Functional Partners:
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
 
 0.897
vps16
VPS16 core subunit of CORVET and HOPS complexes.
    
 
 0.897
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.897
vps41
VPS41 subunit of HOPS complex.
    
 
 0.897
vps11
VPS11 core subunit of CORVET and HOPS complexes.
    
 
 0.896
tbc1d17
TBC1 domain family member 17.
   
 0.891
tbc1d15
TBC1 domain family member 15.
   
 0.891
ENSMMDP00005034928
Si:dkey-238d18.4.
   
 0.876
ENSMMDP00005024215
Zgc:112334.
    
 0.858
LOC115361767
Rab GDP dissociation inhibitor alpha.
    
 0.858
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.