STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115354437E3 ubiquitin-protein ligase TRIM39-like. (463 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.530
ENSMMDP00005010444
annotation not available
    
  0.516
ENSMMDP00005044403
Ubiquitin B.
    
  0.516
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.459
zfand4
Zinc finger AN1-type containing 4.
    
  0.456
LOC115375472
ubiquitin-60S ribosomal protein L40-like.
    
  0.451
ENSMMDP00005000288
Ubiquitin-conjugating enzyme E2T (putative).
    
  0.439
LOC115354181
Ubiquitin-conjugating enzyme E2 D2-like.
    
  0.439
LOC115366221
Ubiquitin-conjugating enzyme E2 D2.
    
  0.439
LOC115366823
Ubiquitin-conjugating enzyme E2 D2-like.
    
  0.439
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.