STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr81WD repeat domain 81. (2089 aa)    
Predicted Functional Partners:
wdr91
WD repeat domain 91.
   
 
 0.966
becn1
Beclin 1.
    
 
 0.919
atg5
Autophagy related 5.
    
 0.827
rbsn
Rabenosyn, RAB effector.
     
 0.770
atg12
Autophagy related 12.
    
 0.759
smpd2
Sphingomyelin phosphodiesterase 2.
     
 0.747
atg16l1
Autophagy related 16 like 1.
    
 0.737
vps18
VPS18 core subunit of CORVET and HOPS complexes.
   
  
 0.707
vps45
Vacuolar protein sorting 45 homolog.
   
 
  0.686
atp6v0b
ATPase H+ transporting V0 subunit b.
     
 0.677
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.