STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab41RAB41, member RAS oncogene family. (214 aa)    
Predicted Functional Partners:
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.912
GCC2
GRIP and coiled-coil domain containing 2.
    
 0.894
ENSMMDP00005024215
Zgc:112334.
   
 0.882
LOC115361767
Rab GDP dissociation inhibitor alpha.
   
 0.882
LOC115355036
Rab GDP dissociation inhibitor beta-like.
   
 0.882
vps39
VPS39 subunit of HOPS complex.
    
 
 0.868
ENSMMDP00005015961
VPS52 subunit of GARP complex.
    
 0.866
ENSMMDP00005047511
VPS53 subunit of GARP complex.
    
 0.847
LOC115360503
Uncharacterized LOC115360503.
   
 0.846
arl1
ADP ribosylation factor like GTPase 1.
   
 0.846
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.