LOC115375489 protein (Myripristis murdjan) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115375489

CCR4-NOT transcription complex subunit 9. (297 aa)

Predicted Functional Partners:

ENSMMDP00005018285

0.992

cnot8

0.986

LOC115366852

0.986

LOC115367659

0.985

cnot3

0.985

CNOT2

0.972

LOC115360928

0.972

LOC115355086

0.972

LOC115360682

0.972

ENSMMDP00005004703

0.969

Your Current Organism:

Myripristis murdjan

NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CNOT2	ENSMMDP00005004703	ENSMMDP00005014654	ENSMMDP00005004703	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 11.	0.972
CNOT2	ENSMMDP00005018285	ENSMMDP00005014654	ENSMMDP00005018285	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex, subunit 1.	0.992
CNOT2	LOC115355086	ENSMMDP00005014654	ENSMMDP00005025253	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 4-like.	0.970
CNOT2	LOC115360682	ENSMMDP00005014654	ENSMMDP00005048569	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 4-like.	0.970
CNOT2	LOC115366852	ENSMMDP00005014654	ENSMMDP00005039232	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 7.	0.986
CNOT2	LOC115367659	ENSMMDP00005014654	ENSMMDP00005012926	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 3-like.	0.985
CNOT2	LOC115375489	ENSMMDP00005014654	ENSMMDP00005026132	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 9.	0.972
CNOT2	cnot3	ENSMMDP00005014654	ENSMMDP00005018231	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 3.	0.985
CNOT2	cnot8	ENSMMDP00005014654	ENSMMDP00005009651	CCR4-NOT transcription complex subunit 2.	CCR4-NOT transcription complex subunit 8.	0.986
ENSMMDP00005004703	CNOT2	ENSMMDP00005004703	ENSMMDP00005014654	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 2.	0.972
ENSMMDP00005004703	ENSMMDP00005018285	ENSMMDP00005004703	ENSMMDP00005018285	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex, subunit 1.	0.999
ENSMMDP00005004703	LOC115355086	ENSMMDP00005004703	ENSMMDP00005025253	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 4-like.	0.909
ENSMMDP00005004703	LOC115360682	ENSMMDP00005004703	ENSMMDP00005048569	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 4-like.	0.909
ENSMMDP00005004703	LOC115360928	ENSMMDP00005004703	ENSMMDP00005016312	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 2.	0.972
ENSMMDP00005004703	LOC115366852	ENSMMDP00005004703	ENSMMDP00005039232	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 7.	0.983
ENSMMDP00005004703	LOC115367659	ENSMMDP00005004703	ENSMMDP00005012926	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 3-like.	0.983
ENSMMDP00005004703	LOC115375489	ENSMMDP00005004703	ENSMMDP00005026132	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 9.	0.969
ENSMMDP00005004703	cnot3	ENSMMDP00005004703	ENSMMDP00005018231	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 3.	0.983
ENSMMDP00005004703	cnot8	ENSMMDP00005004703	ENSMMDP00005009651	CCR4-NOT transcription complex, subunit 11.	CCR4-NOT transcription complex subunit 8.	0.983
ENSMMDP00005018285	CNOT2	ENSMMDP00005018285	ENSMMDP00005014654	CCR4-NOT transcription complex, subunit 1.	CCR4-NOT transcription complex subunit 2.	0.992