STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cln3CLN3 lysosomal/endosomal transmembrane protein, battenin. (446 aa)    
Predicted Functional Partners:
hmgcl
3-hydroxy-3-methylglutaryl-CoA lyase.
 
      0.886
ENSMMDP00005022083
3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1.
 
      0.874
cln5
CLN5 intracellular trafficking protein.
    
 
 0.660
sbds
SBDS ribosome maturation factor.
    
 
 0.649
ppt1
Palmitoyl-protein thioesterase 1.
    
 
 0.638
LOC115363915
Protein Hook homolog 2-like.
    
 
 0.618
mfsd8
Major facilitator superfamily domain containing 8.
    
 
 0.617
cln8
CLN8 transmembrane ER and ERGIC protein.
      
 0.574
tpp1
Tripeptidyl peptidase 1.
      
 0.548
ctns
Cystinosin, lysosomal cystine transporter.
   
  
 0.493
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.