STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115380332Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like. (262 aa)    
Predicted Functional Partners:
gtf2f1
General transcription factor IIF subunit 1.
   
 0.886
timm23
Translocase of inner mitochondrial membrane 23.
    
 0.823
polr2g
RNA polymerase II subunit G.
    
 0.822
polr2d
RNA polymerase II subunit D.
    
 0.775
timm21
Translocase of inner mitochondrial membrane 21.
    
 0.772
polr2j
RNA polymerase II subunit J.
    
 0.760
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
 
      0.749
polr2c
RNA polymerase II subunit C.
    
 0.748
polr1c
RNA polymerase I and III subunit C.
    
 0.748
polr2f
RNA polymerase II subunit F.
   
 0.733
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.