pik3c3 protein (Myripristis murdjan) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pik3c3

Phosphatidylinositol 3-kinase catalytic subunit type 3. (878 aa)

Predicted Functional Partners:

pik3r4

0.999

becn1

0.999

atg14

0.998

uvrag

0.998

nrbf2

0.997

ENSMMDP00005004096

0.985

ENSMMDP00005006716

0.985

ENSMMDP00005046772

0.985

FIG4

0.959

rab5c

0.957

Your Current Organism:

Myripristis murdjan

NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSMMDP00005004096	ENSMMDP00005006716	ENSMMDP00005004096	ENSMMDP00005006716	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1.	0.838
ENSMMDP00005004096	ENSMMDP00005046772	ENSMMDP00005004096	ENSMMDP00005046772	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1a.	0.842
ENSMMDP00005004096	atg14	ENSMMDP00005004096	ENSMMDP00005019326	Unc-51 like autophagy activating kinase 2.	Autophagy related 14.	0.982
ENSMMDP00005004096	becn1	ENSMMDP00005004096	ENSMMDP00005037158	Unc-51 like autophagy activating kinase 2.	Beclin 1.	0.987
ENSMMDP00005004096	nrbf2	ENSMMDP00005004096	ENSMMDP00005010564	Unc-51 like autophagy activating kinase 2.	Nuclear receptor binding factor 2.	0.970
ENSMMDP00005004096	pik3c3	ENSMMDP00005004096	ENSMMDP00005032794	Unc-51 like autophagy activating kinase 2.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.985
ENSMMDP00005004096	pik3r4	ENSMMDP00005004096	ENSMMDP00005031933	Unc-51 like autophagy activating kinase 2.	Phosphoinositide-3-kinase regulatory subunit 4.	0.985
ENSMMDP00005006716	ENSMMDP00005004096	ENSMMDP00005006716	ENSMMDP00005004096	Unc-51 like autophagy activating kinase 1.	Unc-51 like autophagy activating kinase 2.	0.838
ENSMMDP00005006716	atg14	ENSMMDP00005006716	ENSMMDP00005019326	Unc-51 like autophagy activating kinase 1.	Autophagy related 14.	0.981
ENSMMDP00005006716	becn1	ENSMMDP00005006716	ENSMMDP00005037158	Unc-51 like autophagy activating kinase 1.	Beclin 1.	0.987
ENSMMDP00005006716	nrbf2	ENSMMDP00005006716	ENSMMDP00005010564	Unc-51 like autophagy activating kinase 1.	Nuclear receptor binding factor 2.	0.970
ENSMMDP00005006716	pik3c3	ENSMMDP00005006716	ENSMMDP00005032794	Unc-51 like autophagy activating kinase 1.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.985
ENSMMDP00005006716	pik3r4	ENSMMDP00005006716	ENSMMDP00005031933	Unc-51 like autophagy activating kinase 1.	Phosphoinositide-3-kinase regulatory subunit 4.	0.985
ENSMMDP00005046772	ENSMMDP00005004096	ENSMMDP00005046772	ENSMMDP00005004096	Unc-51 like autophagy activating kinase 1a.	Unc-51 like autophagy activating kinase 2.	0.842
ENSMMDP00005046772	atg14	ENSMMDP00005046772	ENSMMDP00005019326	Unc-51 like autophagy activating kinase 1a.	Autophagy related 14.	0.981
ENSMMDP00005046772	becn1	ENSMMDP00005046772	ENSMMDP00005037158	Unc-51 like autophagy activating kinase 1a.	Beclin 1.	0.987
ENSMMDP00005046772	nrbf2	ENSMMDP00005046772	ENSMMDP00005010564	Unc-51 like autophagy activating kinase 1a.	Nuclear receptor binding factor 2.	0.970
ENSMMDP00005046772	pik3c3	ENSMMDP00005046772	ENSMMDP00005032794	Unc-51 like autophagy activating kinase 1a.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.985
ENSMMDP00005046772	pik3r4	ENSMMDP00005046772	ENSMMDP00005031933	Unc-51 like autophagy activating kinase 1a.	Phosphoinositide-3-kinase regulatory subunit 4.	0.985
FIG4	becn1	ENSMMDP00005033496	ENSMMDP00005037158	FIG4 phosphoinositide 5-phosphatase.	Beclin 1.	0.938