STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubtfUpstream binding transcription factor. (749 aa)    
Predicted Functional Partners:
polr1e
RNA polymerase I subunit E.
    
 0.850
ENSMMDP00005044435
General transcription factor IIH, polypeptide 1.
    
 0.829
gtf2h3
General transcription factor IIH subunit 3.
    
 0.824
polr1a
RNA polymerase I subunit A.
    
 0.822
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.811
polr1b
RNA polymerase I subunit B.
   
 0.800
rrn3
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.798
LOC115365807
Histone H2A.V.
   
 0.793
H2AZ1
Histone H2A.Z.
   
 0.793
actr8
Actin related protein 8.
    
 0.785
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.