STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp47Ubiquitin specific peptidase 47. (1400 aa)    
Predicted Functional Partners:
polb
DNA polymerase beta.
    
 0.774
trip12
Thyroid hormone receptor interactor 12.
   
  
 0.756
poll
DNA polymerase lambda.
    
 0.733
LOC115366480
F-box/WD repeat-containing protein 11.
    
 
 0.729
ENSMMDP00005022897
annotation not available
    
 0.675
ENSMMDP00005022924
Enkurin domain containing 1.
    
 0.675
polm
DNA polymerase mu.
    
 0.675
ENSMMDP00005044683
Deoxynucleotidyltransferase, terminal.
    
 0.675
LOC115374219
Vegetative incompatibility protein HET-E-1-like.
    
 
 0.659
ENSMMDP00005021842
HECT domain containing 1.
   
  
 0.468
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.