STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubr5Ubiquitin protein ligase E3 component n-recognin 5. (2805 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
  
0.965
rps27a
Ribosomal protein S27a.
    
 
 0.908
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
   0.880
ENSMMDP00005044403
Ubiquitin B.
    
   0.869
LOC115375472
ubiquitin-60S ribosomal protein L40-like.
    
   0.846
ENSMMDP00005010444
annotation not available
    
   0.824
USP34
Ubiquitin specific peptidase 34.
   
  
 0.800
ENSMMDP00005047466
SET domain containing 2, histone lysine methyltransferase.
   
  
 0.775
rrm2b
Ribonucleotide reductase regulatory TP53 inducible subunit M2B.
 
   
 0.763
rrm2
Ribonucleotide reductase regulatory subunit M2.
 
   
 0.760
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.