STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005044622Retinoid X receptor, alpha a. (459 aa)    
Predicted Functional Partners:
nr1h3
Nuclear receptor subfamily 1 group H member 3.
   
0.972
PPARG
Peroxisome proliferator activated receptor gamma.
    
0.945
ENSMMDP00005027588
Mediator complex subunit 1.
    
 0.929
ppara
Peroxisome proliferator activated receptor alpha.
    
0.927
ppard
Peroxisome proliferator activated receptor delta.
    
0.903
ENSMMDP00005045792
Nuclear receptor corepressor 1.
    
 0.903
ENSMMDP00005046567
Nuclear receptor corepressor 2.
    
 0.903
ENSMMDP00005030376
annotation not available
    
0.902
nr1h4
Nuclear receptor subfamily 1 group H member 4.
   
0.898
LOC115361725
Bile acid receptor-like.
   
0.898
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.