STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1bYip1 interacting factor homolog B, membrane trafficking protein. (305 aa)    
Predicted Functional Partners:
rabac1
Rab acceptor 1.
   
 
 0.816
selenos
Selenoprotein S.
   
 
 0.805
LOC115354468
Protein YIPF5-like.
   
 
 0.805
yipf5
Yip1 domain family member 5.
   
 
 0.805
yipf4
Yip1 domain family member 4.
   
 
 0.801
ENSMMDP00005045660
Macrophage erythroblast attacher.
   
 
 0.732
yipf1
Yip1 domain family member 1.
   
  
 0.613
ENSMMDP00005013634
Yip1 domain family, member 2.
   
  
 0.612
RAB1A
Ras-related protein Rab-1A.
   
 
 0.517
LOC115372476
Ras-related protein ORAB-1-like.
   
 
 0.517
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.