STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005046735Rho GTPase activating protein 39. (758 aa)    
Predicted Functional Partners:
LOC115374146
Uncharacterized LOC115374146.
    
  0.749
rhof
Ras homolog family member F, filopodia associated.
    
  0.684
capzb
Capping actin protein of muscle Z-line subunit beta.
    
  0.681
LOC115370020
Rho GTPase-activating protein 1-like.
     
0.631
ENSMMDP00005013899
SUMO specific peptidase 2.
    
  0.626
LOC115362322
Sentrin-specific protease 1-like.
    
  0.626
LOC115358911
Cell division control protein 42 homolog.
    
 0.620
CDC42
Cell division control protein 42 homolog.
    
 0.620
ENSMMDP00005055325
Rhomboid, veinlet-like 3 (Drosophila).
    
  0.605
rpl18
Ribosomal protein L18.
    
 0.599
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.