STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin28bLin-28 homolog B. (233 aa)    
Predicted Functional Partners:
sympk
Symplekin.
    
 0.746
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.727
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.725
ENSMMDP00005040494
Small nuclear ribonucleoprotein polypeptide F.
    
  0.719
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
  0.709
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.699
rps11
Ribosomal protein S11.
   
 
 0.682
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
  0.673
NCBP1
Nuclear cap binding protein subunit 1.
    
  0.667
polr2f
RNA polymerase II subunit F.
  
 
 0.663
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.