STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005053096annotation not available (138 aa)    
Predicted Functional Partners:
LOC115374146
Uncharacterized LOC115374146.
    
  0.738
ENSMMDP00005052083
annotation not available
    
  0.567
LOC115359472
Complement C1q subcomponent subunit C-like.
    
  0.527
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.525
rps27a
Ribosomal protein S27a.
    
  0.498
setdb1
SET domain bifurcated histone lysine methyltransferase 1.
    
  0.472
ENSMMDP00005041236
annotation not available
    
  0.472
ENSMMDP00005020225
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
  0.466
trrap
Transformation/transcription domain associated protein.
    
  0.466
LOC115371254
Transcription initiation factor TFIID subunit 9-like.
    
  0.465
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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