STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pggt1bProtein geranylgeranyltransferase type I subunit beta. (364 aa)    
Predicted Functional Partners:
fnta
Farnesyltransferase, CAAX box, alpha.
    
 0.999
gart
annotation not available
      
 0.577
hacd1
3-hydroxyacyl-CoA dehydratase 1.
     
 0.538
hacd2
3-hydroxyacyl-CoA dehydratase 2.
     
 0.538
ammecr1
AMMECR nuclear protein 1.
    
   0.510
icmt
Isoprenylcysteine carboxyl methyltransferase.
      
 0.480
rap1b
RAP1B, member of RAS oncogene family.
    
 
 0.477
LOC115361890
Ras-related protein Rap-1b.
    
 
 0.477
LOC115359219
Ras-related protein Rap-1A-like.
    
 
 0.477
ENSMMDP00005002126
Hes-related family bHLH transcription factor with YRPW motif 1.
    
 
 0.454
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.