STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSMMDP00005056055Si:dkey-225n22.4. (491 aa)    
Predicted Functional Partners:
LOC115374146
Uncharacterized LOC115374146.
    
  0.738
ENSMMDP00005052083
annotation not available
    
 0.568
lig1
DNA ligase 1.
    
 0.564
ENSMMDP00005018896
Integrin, beta 6.
    
 0.547
ENSMMDP00005035938
Integrin, beta 4.
    
 0.547
LOC115359472
Complement C1q subcomponent subunit C-like.
    
  0.527
ENSMMDP00005022443
Integrin, beta 8.
    
  0.525
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.525
ENSMMDP00005032636
Collagen, type VI, alpha 1.
   
0.523
ENSMMDP00005054667
annotation not available
    
  0.514
Your Current Organism:
Myripristis murdjan
NCBI taxonomy Id: 586833
Other names: M. murdjan, Ostichthys murdjan, Perca murdjan, Sciaena murdjan, pinecone soldierfish
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.