Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC09733.1Hypothetical protein. (211 aa)    
Predicted Functional Partners:
yqiK
Inner membrane protein YqiK.
 
  
 0.968
APC09735.1
ATPase involved in DNA repair.
 
    0.905
APC09736.1
Rhomboid family protein.
 
     0.611
APC11246.1
HD domain protein.
  
     0.500
APC13165.1
Hypothetical protein.
  
     0.500
APC13088.1
Bacterial regulatory protein, tetR family.
  
     0.486
dmsC_4
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.470
APC14076.1
Sulfatase.
  
     0.451
dmsC_3
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.445
APC13767.1
Mu DNA-binding domain protein.
  
     0.423
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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