STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqiKInner membrane protein YqiK. (733 aa)    
Predicted Functional Partners:
APC09733.1
Hypothetical protein.
 
  
 0.946
APC09735.1
ATPase involved in DNA repair.
 
    0.937
ybbJ
Inner membrane protein YbbJ.
  
  
 0.759
APC09736.1
Rhomboid family protein.
 
     0.717
APC10770.1
SPFH domain / Band 7 family protein.
  
  
 0.563
APC13165.1
Hypothetical protein.
  
     0.551
APC11246.1
HD domain protein.
  
     0.523
ybiA
Swarming motility protein YbiA.
  
     0.495
pspA_1
Phage shock protein A.
  
  
 0.475
pspA_2
Phage shock protein A.
  
  
 0.475
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.