Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC09735.1ATPase involved in DNA repair. (1645 aa)    
Predicted Functional Partners:
yqiK
Inner membrane protein YqiK.
 
  
 0.955
APC09733.1
Hypothetical protein.
 
    0.905
APC09736.1
Rhomboid family protein.
 
    0.858
radA
Hypothetical protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
     
 0.674
APC11731.1
Hypothetical protein.
  
 
 0.582
ybiA
Swarming motility protein YbiA.
  
 
   0.547
APC12452.1
Hypothetical protein; Protects the bacterial cell from host peptidases.
  
   0.537
APC13165.1
Hypothetical protein.
  
     0.520
APC11246.1
HD domain protein.
 
     0.495
pac
Penicillin G acylase precursor.
       0.469
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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